Enigma-Dev - User contributions [en]

File:DISK MHippo.csv

2019-07-19T00:57:15Z

Naomi:

File:DISK age.csv

2019-07-19T00:57:06Z

Naomi:

File:ADNI1.csv

2019-07-18T18:37:04Z

Naomi:

2019-06-03T18:52:18Z

Naomi:

= Welcome to the ENIGMA Organic Data Science wiki! =
This is a demonstration prototype for the [http://www.organicdatascience.org Organic Data Science] wiki for the [http://enigma.usc.edu ENIGMA collaboration].

The site was set up on December 10, 2014.

For any questions or to get an account on this wiki, please contact us at organic.data.science@gmail.com.

The [[ENIGMA WIKI OVERVIEW TABLES]] give an overview of all working groups, projects, people, and cohort data available in ENIGMA collaboration.

=== Cheat Sheet for the ENIGMA Wiki ===
[[ENIGMA Wiki Demonstration]]

= This Month's Highlight =

== Meeting information ==

[https://urldefense.proofpoint.com/v2/url?u=https-3A__drive.google.com_file_d_16Fyt8hFwCf-2DTi375RuqokVc3y6knMzI1_view-3Fusp-3Dsharing&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=WQmabzZaygepFVVAyGfxNqUB5Wpl19avrDAwELP26dw&m=yCfZi0_Q7Hg7pTF3w77cvLo8xL4U3s-cPXf58a6dG4s&s=6OwaMjDVc4hQKQiAngPfrBAXY3eiCY5s1-50uJHQA5Q&e= [Agenda (May 7th and 8th)]]

[https://drive.google.com/drive/u/0/folders/0B_UnK1gPaweRUE5LRVdhOENCY2M [CHAIR'S Resource G-DRIVE]]
enigma-chairs-l@mymailinglists.usc.edu

== Our first ENIGMA-ODS live demo ==

Here's an example page for collaborating:

What SOBP talks and sessions may be of interest to the group?
[[SOBP 2018 must-see]]
*self-promotion is 100% acceptable

=== Who's part of a project? ===

The table below summarizes the contributors of the [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]].
If your name is not on this list and you have contributed to the [[ENIGMA3_Cortical_GWAS]] project, please fill out the required [Google author form https://goo.gl/forms/noprWAM85eznPOqI3].
Please note, ODS is not currently linked to the form, so you will not see updates here immediately.

{{#ask:
[[Category:Person_(E)]] [[-HasImagingDataCollector_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasGeneticDataCollector_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasGeneticDataAnalyst_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasImagingDataAnalyst_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasProjectDeveloper_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasMainPrincipalInvestigator_(E).-HasCohort_(E)::ENIGMA3_Cortical_GWAS]]
| ?HasEmail_(E)
| limit=30
| format=broadtable
}}

===Author list generation===

Now, see our demo for formatting the contributors for the [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]] into an author-list with proper ordering, affiliations, contributions, and acknowledgements

First, we need a project page -- [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]]

Next, we need a set of rules --
[http://organicdatacuration.org/enigma_dev/index.php/AuthorRules:ENIGMA3_Cortical_GWAS Link to E3's author list formatting rules]

Here, we get our output --
[http://organicdatacuration.org/enigma_dev/index.php/Special:authorGeneration?project=ENIGMA3_Cortical_GWAS Link to E3's author list output]

[http://organicdatacuration.org/enigma_dev/index.php/Author_Rules_Documentation Documentation for Generating Author Rules]

= Next Month's Highlight: ENIGMA at OHBM and BGA =
Stay tuned.

= Special Focus: ENIGMA's [[SchizophreniaWG | Schizophrenia Working Group]] =
Congratulations to [[Van_Erp_Theo_GM | Theo van Erp]], [[Turner_Jessica_A | Jessica Turner]], and the rest of the ENIGMA [[SchizophreniaWG | Schizophrenia Working Group]] for their recent acceptance of the [[SchizophreniaWG | Schizophrenia Cortical Project]] in Biological Psychiatry!

== Projects of the [[SchizophreniaWG | Schizophrenia Working Group]] ==

The table below summarizes all the projects sponsored by the [[SchizophreniaWG | Schizophrenia Working Group]]:

{{#ask: [[Category:Project_(E)]] [[-HasProject_(E)::SchizophreniaWG]]
| ?hasBriefDescription_(E)
| ?hasContact_(E)
| limit=50
| format=broadtable
}}

== Cohorts of the [[BD WG | Bipolar Working Group]] ==

The table below summarizes all the cohorts used in projects of the Bipolar Working Group:
{{#ask: [[Category:Cohort_(E)]] [[-HasCohort_(E)::BD_WG]]
| ?hasName_(E)
| limit=50
| format=broadtable
}}

=See other [[ENIGMA Highlights]]=

=Before you start: About ODS and the Semantic Media Wiki=

Anyone can edit this wiki to add information about their own site, their participation in ENIGMA Working Groups, and the status of their work. Before you can make edits you will be asked to go through a training session for semantic wikis, since this is a special wiki that has semantic annotations and reasoning. You can also go through the documentation [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here]

To learn the basics of how wikis work, consult our [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the official [//meta.wikimedia.org/wiki/Help:Contents User's Guide].

Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.

* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]

Main Page

2019-06-03T18:50:30Z

Naomi:

= Welcome to the ENIGMA Organic Data Science wiki! =
This is a demonstration prototype for the [http://www.organicdatascience.org Organic Data Science] wiki for the [http://enigma.usc.edu ENIGMA collaboration].

The site was set up on December 10, 2014.

For any questions or to get an account on this wiki, please contact us at organic.data.science@gmail.com.

The [[ENIGMA WIKI OVERVIEW TABLES]] give an overview of all working groups, projects, people, and cohort data available in ENIGMA collaboration.

=== Cheat Sheet for the ENIGMA Wiki ===
[[ENIGMA Wiki Demonstration]]

= This Month's Highlight: ENIGMA at SOBP =

Welcome to our May 2018 ENIGMA Chairs Annual Retreat!

== Meeting information ==

[https://urldefense.proofpoint.com/v2/url?u=https-3A__drive.google.com_file_d_16Fyt8hFwCf-2DTi375RuqokVc3y6knMzI1_view-3Fusp-3Dsharing&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=WQmabzZaygepFVVAyGfxNqUB5Wpl19avrDAwELP26dw&m=yCfZi0_Q7Hg7pTF3w77cvLo8xL4U3s-cPXf58a6dG4s&s=6OwaMjDVc4hQKQiAngPfrBAXY3eiCY5s1-50uJHQA5Q&e= [Agenda (May 7th and 8th)]]

[https://drive.google.com/drive/u/0/folders/0B_UnK1gPaweRUE5LRVdhOENCY2M [CHAIR'S Resource G-DRIVE]]
enigma-chairs-l@mymailinglists.usc.edu

== Our first ENIGMA-ODS live demo ==

Here's an example page for collaborating:

What SOBP talks and sessions may be of interest to the group?
[[SOBP 2018 must-see]]
*self-promotion is 100% acceptable

=== Who's part of a project? ===

The table below summarizes the contributors of the [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]].
If your name is not on this list and you have contributed to the [[ENIGMA3_Cortical_GWAS]] project, please fill out the required [Google author form https://goo.gl/forms/noprWAM85eznPOqI3].
Please note, ODS is not currently linked to the form, so you will not see updates here immediately.

{{#ask:
[[Category:Person_(E)]] [[-HasImagingDataCollector_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasGeneticDataCollector_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasGeneticDataAnalyst_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasImagingDataAnalyst_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasProjectDeveloper_(E)::ENIGMA3_Cortical_GWAS]] OR
[[Category:Person_(E)]] [[-HasMainPrincipalInvestigator_(E).-HasCohort_(E)::ENIGMA3_Cortical_GWAS]]
| ?HasEmail_(E)
| limit=30
| format=broadtable
}}

===Author list generation===

Now, see our demo for formatting the contributors for the [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]] into an author-list with proper ordering, affiliations, contributions, and acknowledgements

First, we need a project page -- [[ENIGMA3_Cortical_GWAS | ENIGMA3 Cortical GWAS Project]]

Next, we need a set of rules --
[http://organicdatacuration.org/enigma_dev/index.php/AuthorRules:ENIGMA3_Cortical_GWAS Link to E3's author list formatting rules]

Here, we get our output --
[http://organicdatacuration.org/enigma_dev/index.php/Special:authorGeneration?project=ENIGMA3_Cortical_GWAS Link to E3's author list output]

[http://organicdatacuration.org/enigma_dev/index.php/Author_Rules_Documentation Documentation for Generating Author Rules]

= Next Month's Highlight: ENIGMA at OHBM and BGA =
Stay tuned.

= Special Focus: ENIGMA's [[SchizophreniaWG | Schizophrenia Working Group]] =
Congratulations to [[Van_Erp_Theo_GM | Theo van Erp]], [[Turner_Jessica_A | Jessica Turner]], and the rest of the ENIGMA [[SchizophreniaWG | Schizophrenia Working Group]] for their recent acceptance of the [[SchizophreniaWG | Schizophrenia Cortical Project]] in Biological Psychiatry!

== Projects of the [[SchizophreniaWG | Schizophrenia Working Group]] ==

The table below summarizes all the projects sponsored by the [[SchizophreniaWG | Schizophrenia Working Group]]:

{{#ask: [[Category:Project_(E)]] [[-HasProject_(E)::SchizophreniaWG]]
| ?hasBriefDescription_(E)
| ?hasContact_(E)
| limit=50
| format=broadtable
}}

== Cohorts of the [[BD WG | Bipolar Working Group]] ==

The table below summarizes all the cohorts used in projects of the Bipolar Working Group:
{{#ask: [[Category:Cohort_(E)]] [[-HasCohort_(E)::BD_WG]]
| ?hasName_(E)
| limit=50
| format=broadtable
}}

=See other [[ENIGMA Highlights]]=

=Before you start: About ODS and the Semantic Media Wiki=

Anyone can edit this wiki to add information about their own site, their participation in ENIGMA Working Groups, and the status of their work. Before you can make edits you will be asked to go through a training session for semantic wikis, since this is a special wiki that has semantic annotations and reasoning. You can also go through the documentation [http://www.organicdatascience.org/framework/index.php/How_to_use_this_semantic_wiki here]

To learn the basics of how wikis work, consult our [http://www.organicdatascience.org/framework/index.php/Quick_Guide_to_Using_a_Wiki Quick Guide to Using a Wiki], or the official [//meta.wikimedia.org/wiki/Help:Contents User's Guide].

Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.

* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]
* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]